Emulator

Fill out the issue template properly.

I provided every answer already. I didn't keep the template text in the issue, it's useless noise and some of it doesn't apply.

Do you have a save near that location?

Why are you using JITIL? Use JIT64.

I never had a problem with JITIL with the games I play. I already tried JIT64 same issue. I attached my save. You need to beat the imprisoned then the cutscene will happen.

I also made a save state that takes after the imprisoned is beat but before the crash.
https://skydrive.live.com/redir?resid=1973992AD6E248B0!1015&authkey=!AHTWdiPlUS9qpPo

did you try dsp LLE? and OpenGL?

Try to use OpenGL and JIT (recommended), i've already have this problem at this moment..

OpenGL and JIT worked. I couldn't use my save state, but I beat the guy pretty quick. I updated to 3.5-202 before trying it.

That would be assuming wrong. I only used save states for bug purposes. In
fact, what I did was beat the boss, and do a save state right before the
point of crashing so you can get the exact reason why it's crashing and fix
it.

The silent realm zones are a problem in DX11, as well as imprisoned scenes.
It still crashes, the bug is not fixed or this is a very similar bug. You
can load the game, load the game save (not save state) and try to enter the
silent realm. It took me 3 tries to enter it without crashing on DX11. I
didn't change anything in between. Seems like after a while, something gets
corrupted and it will crash, but it doesn't happen 100% of the time, just
most of the time.

OpenGL and JIT worked, but that also crashed on me a few times. Silent
Realms plus stuff involving Imprisoned cut scenes still crashes dolphin.

I already gotten past the crash parts, but no I don't think I tried that.

I've beaten the game with DX11, the only crash I've had was the Silent Realm one.
Started playing with Dolphin build 940 or something near that one.
Guess this one was unintentionally fixed :)