Emulator

Game Name?

xenoblade chronicles

Game ID?

SX4E01

What's the problem? Describe what went wrong in few words.

When starting the game, the entire desktop goes black, as if dolphin is going into full screen mode, then the window appears, and I don't have dolphin set to play full screen.

What did you expect to happen instead?

Only the window shoould pop up and appear.

What steps will reproduce the problem?
[Don't assume we have ever played the game and know any level names. Be as
specific as possible.]

1. Just starting the game

Dolphin 3.5 and 3.5-367 are old versions of Dolphin that have
known issues and bugs, so don't report issues about them and test the
latest Dolphin version first.
Which versions of Dolphin did you test on?

I only tested this on 4.0-5901

Does using an older version of Dolphin solve your issue? If yes, which
versions of Dolphin used to work?

I only tested this on 4.0-5901

What are your PC specifications? (including, but not limited to: Operating
System, CPU and GPU)

Windows 7 x64, i7-3610QM, Nvidia GTX 660M

Is there any other relevant information? (e.g. logs, screenshots,
configuration files)
[Upload big files to a hosting service and post links here!]

I tested this with D3D, and OpenGL, it acted the same way.