Emulator

What's the problem? Describe what went wrong in few words.
New directories are being created at the root of the drive dolphin is run on.

C:/shared2/sys/SYSCONF
C:/sys/uid.sys

What did you expect to happen instead?
Not the above

What steps will reproduce the problem?
Simply run Dolphin.exe

Which versions of Dolphin did you test on?
4.0-5847
4.0-5849 (issue was introduced in this version)
4.0-5858

Does using an older version of Dolphin solve your issue? If yes, which
versions of Dolphin used to work?
4.0-5847

What are your PC specifications? (including, but not limited to: Operating
System, CPU and GPU)
Windows 7 x64
i7 4770k
GTX 780Ti